Also to people from Poland flashing any firmware other than Asus-wrt stock will void the warranty on any asus device . Got this information from Asus themselfs. So would be nice to clear anything including jffs2 which is created exclusively on asus-merlin i believe or am i wrong because i dont seem to find info about this on stock/asus website.
The JFFS2 partition is present on stock firmware as well, it's where Asus stores various information like the AiProtection databases and such. On HND model part of the router settings are also saved there by Asus.
The warranty question will vary depending on who you ask. First-line tech support most likely don't know, so the answer will change every time you ask a different person. There has been cases where people asked Asus, and were told that it would not affect their warranty.