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spdMerlin.log
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Apr 14 13:40:56 RT-AC86U spdMerlin: Setting QoS Upload Speed to 18106 Kbps (was 19418 Kbps)
Apr 14 14:10:01 RT-AC86U spdMerlin: Starting speedtest using using auto-selected server for WAN interface
Apr 14 14:10:29 RT-AC86U spdMerlin: Speedtest results - Download: 131.77 Mbps (data used: 118.2 MB) - Upload: 15.52 Mbps (data used: 14.4 MB)
Apr 14 14:10:29 RT-AC86U spdMerlin: Connection quality - Latency: 9.22 ms (0.89 ms jitter) - Packet Loss: 0.0%
Apr 14 14:10:29 RT-AC86U spdMerlin: Starting speedtest using using auto-selected server for VPNC1 interface
Apr 14 14:11:01 RT-AC86U spdMerlin: Speedtest results - Download: 65.31 Mbps (data used: 98.1 MB) - Upload: 11.15 Mbps (data used: 18.0 MB)
Apr 14 14:11:01 RT-AC86U spdMerlin: Connection quality - Latency: 10.38 ms (0.31 ms jitter) - Packet Loss: 0.0%
Apr 14 14:11:06 RT-AC86U spdMerlin: Calculated Download speed (137297) Kbps does not exceed 5% threshold of existing value (143608 Kbps)
Apr 14 14:11:06 RT-AC86U spdMerlin: Calculated Upload speed (17741) Kbps does not exceed 5% threshold of existing value (18106 Kbps)
Apr 14 14:40:01 RT-AC86U spdMerlin: Starting speedtest using using auto-selected server for WAN interface
Apr 14 14:40:27 RT-AC86U spdMerlin: Speedtest results - Download: 133.67 Mbps (data used: 125.8 MB) - Upload: 15.88 Mbps (data used: 14.6 MB)
Apr 14 14:40:27 RT-AC86U spdMerlin: Connection quality - Latency: 5.66 ms (1.15 ms jitter) - Packet Loss: Not available.
Apr 14 14:40:27 RT-AC86U spdMerlin: Starting speedtest using using auto-selected server for VPNC1 interface
Apr 14 14:40:51 RT-AC86U spdMerlin: Speedtest results - Download: 113.32 Mbps (data used: 139.8 MB) - Upload: 14.48 Mbps (data used: 12.9 MB)
Apr 14 14:40:51 RT-AC86U spdMerlin: Connection quality - Latency: 9.59 ms (4.34 ms jitter) - Packet Loss: 0.0%
Apr 14 14:40:56 RT-AC86U spdMerlin: Setting QoS Download Speed to 136311 Kbps (was 143608 Kbps)
Apr 14 14:40:56 RT-AC86U spdMerlin: Calculated Upload speed (17336) Kbps does not exceed 5% threshold of existing value (18106 Kbps)
Apr 14 15:10:01 RT-AC86U spdMerlin: Starting speedtest using using auto-selected server for WAN interface
Apr 14 15:10:27 RT-AC86U spdMerlin: Speedtest results - Download: 124.16 Mbps (data used: 135.6 MB) - Upload: 16.59 Mbps (data used: 9.8 MB)
Apr 14 15:10:27 RT-AC86U spdMerlin: Connection quality - Latency: 9.33 ms (6.03 ms jitter) - Packet Loss: 0.0%
Apr 14 15:10:27 RT-AC86U spdMerlin: Starting speedtest using using auto-selected server for VPNC1 interface
Apr 14 15:11:00 RT-AC86U spdMerlin: Speedtest results - Download: 101.16 Mbps (data used: 153.6 MB) - Upload: 11.05 Mbps (data used: 19.0 MB)
Apr 14 15:11:00 RT-AC86U spdMerlin: Connection quality - Latency: 11.51 ms (7.57 ms jitter) - Packet Loss: 0.0%
Apr 14 15:11:05 RT-AC86U spdMerlin: Calculated Download speed (134279) Kbps does not exceed 5% threshold of existing value (136311 Kbps)
Apr 14 15:11:05 RT-AC86U spdMerlin: Setting QoS Upload Speed to 17143 Kbps (was 18106 Kbps)
Apr 14 15:40:02 RT-AC86U spdMerlin: Starting speedtest using using auto-selected server for WAN interface
Apr 14 15:40:30 RT-AC86U spdMerlin: Speedtest results - Download: 263.09 Mbps (data used: 392.1 MB) - Upload: 28.75 Mbps (data used: 14.5 MB)
Apr 14 15:40:30 RT-AC86U spdMerlin: Connection quality - Latency: 8.38 ms (0.78 ms jitter) - Packet Loss: 0.0%
Apr 14 15:40:30 RT-AC86U spdMerlin: Starting speedtest using using auto-selected server for VPNC1 interface
Apr 14 15:40:57 RT-AC86U spdMerlin: Speedtest results - Download: 120.82 Mbps (data used: 201.7 MB) - Upload: 26.64 Mbps (data used: 24.4 MB)
Apr 14 15:40:57 RT-AC86U spdMerlin: Connection quality - Latency: 10.45 ms (5.83 ms jitter) - Packet Loss: 0.0%
Apr 14 15:41:01 RT-AC86U spdMerlin: Setting QoS Download Speed to 146118 Kbps (was 307200 Kbps)
Apr 14 15:41:01 RT-AC86U spdMerlin: Setting QoS Upload Speed to 18294 Kbps (was 30720 Kbps)
Apr 14 16:10:02 RT-AC86U spdMerlin: Starting speedtest using using auto-selected server for WAN interface
As far as I can see spdMerlin is already done at the time you mentioned.
When the stats don't show up, if I hit Apply on the CakeQos-Merlin tab, without making any changes, the stats show up after the router is done processing the (none) changes.
Are there any other processes of interest? Otherwise I'm leaning towards uninstalling uiScribe/scribe/syslogn-ng, so we can see things in their context.